Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01003227.1 Corchorus capsularis cultivar CVL-1 contig03235, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2768
ACGTcount: A:0.30, C:0.15, G:0.17, T:0.38


Found at i:80 original size:11 final size:10

Alignment explanation


    Indices: 54--79  Score: 52
    Period size: 10  Copynumber: 2.6  Consensus size: 10

         44 TCGTTTTTTG

                      
         54 TTTTTTGCTT
          1 TTTTTTGCTT

                      
         64 TTTTTTGCTT
          1 TTTTTTGCTT

                  
         74 TTTTTT
          1 TTTTTT

         80 TTTAATTTTG


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  10   16  1.00

ACGTcount: A:0.00, C:0.08, G:0.08, T:0.85


Consensus pattern (10 bp):   
TTTTTTGCTT
Done.