Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01003229.1 Corchorus capsularis cultivar CVL-1 contig03237, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4128
ACGTcount: A:0.31, C:0.17, G:0.18, T:0.34


Found at i:3938 original size:16 final size:16

Alignment explanation


    Indices: 3919--3952  Score: 68
    Period size: 16  Copynumber: 2.1  Consensus size: 16

       3909 ACAATTCAGA

                            
       3919 AAGCAGAAAAGCTCTG
          1 AAGCAGAAAAGCTCTG

                            
       3935 AAGCAGAAAAGCTCTG
          1 AAGCAGAAAAGCTCTG

              
       3951 AA
          1 AA

       3953 ATATTTCAGA


Statistics
Matches: 18,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  16   18  1.00

ACGTcount: A:0.47, C:0.18, G:0.24, T:0.12


Consensus pattern (16 bp):   
AAGCAGAAAAGCTCTG
Done.