Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01003259.1 Corchorus capsularis cultivar CVL-1 contig03267, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3458
ACGTcount: A:0.35, C:0.18, G:0.16, T:0.31


Found at i:872 original size:27 final size:27

Alignment explanation


    Indices: 830--883  Score: 72
    Period size: 27  Copynumber: 2.0  Consensus size: 27

        820 CATGGGAGGC

                             *         
        830 TCACGATACATAGAAGGCGCAAGATCG
          1 TCACGATACATAGAAGGAGCAAGATCG

                   *   *      *        
        857 TCACGATCCATGGAAGGATCAAGATCG
          1 TCACGATACATAGAAGGAGCAAGATCG

        884 ATACGTATGG


Statistics
Matches: 23,  Mismatches: 4, Indels: 0
        0.85            0.15        0.00

Matches are distributed among these distances:
  27   23  1.00

ACGTcount: A:0.35, C:0.22, G:0.26, T:0.17


Consensus pattern (27 bp):   
TCACGATACATAGAAGGAGCAAGATCG
Done.