Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01003267.1 Corchorus capsularis cultivar CVL-1 contig03275, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 607

Length: 1013
ACGTcount: A:0.27, C:0.25, G:0.16, T:0.32


Found at i:407 original size:30 final size:30

Alignment explanation


    Indices: 371--428  Score: 100
    Period size: 30  Copynumber: 1.9  Consensus size: 30

        361 CATCTTCAAG

                                           
        371 TCCATGATAAGTCCTTGG-CGCATCATTCCC
          1 TCCATGATAAG-CCTTGGCCGCATCATTCCC

                                        
        401 TCCATGATAAGCCTTGGCCGCATCATTC
          1 TCCATGATAAGCCTTGGCCGCATCATTC

        429 TGTTCCCCTT


Statistics
Matches: 27,  Mismatches: 0, Indels: 2
        0.93            0.00        0.07

Matches are distributed among these distances:
  29    6  0.22
  30   21  0.78

ACGTcount: A:0.21, C:0.33, G:0.17, T:0.29


Consensus pattern (30 bp):   
TCCATGATAAGCCTTGGCCGCATCATTCCC
Done.