Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01003277.1 Corchorus capsularis cultivar CVL-1 contig03285, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 971

Length: 1619
ACGTcount: A:0.37, C:0.16, G:0.20, T:0.27


Found at i:804 original size:19 final size:18

Alignment explanation


    Indices: 772--807  Score: 54
    Period size: 19  Copynumber: 1.9  Consensus size: 18

        762 ATATCATTTT

                     *        
        772 AAAAGATTTTTCAAAAAA
          1 AAAAGATTTCTCAAAAAA

                              
        790 AAAATGATTTCTCAAAAA
          1 AAAA-GATTTCTCAAAAA

        808 TGGTTTTGAA


Statistics
Matches: 16,  Mismatches: 1, Indels: 1
        0.89            0.06        0.06

Matches are distributed among these distances:
  18    4  0.25
  19   12  0.75

ACGTcount: A:0.58, C:0.08, G:0.06, T:0.28


Consensus pattern (18 bp):   
AAAAGATTTCTCAAAAAA
Done.