Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01003279.1 Corchorus capsularis cultivar CVL-1 contig03287, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2115
ACGTcount: A:0.31, C:0.18, G:0.19, T:0.32


Found at i:2007 original size:21 final size:20

Alignment explanation


    Indices: 1983--2025  Score: 52
    Period size: 21  Copynumber: 2.1  Consensus size: 20

       1973 TAGAGATGAG

                                  
       1983 ATGAAGGAACA-GTTGAAACAA
          1 ATGAAGGAA-ATGTTG-AACAA

                *               
       2004 ATGATGGAAATGTTGAACAA
          1 ATGAAGGAAATGTTGAACAA

              
       2024 AT
          1 AT

       2026 TGACTGGGAC


Statistics
Matches: 20,  Mismatches: 1, Indels: 3
        0.83            0.04        0.12

Matches are distributed among these distances:
  20    8  0.40
  21   12  0.60

ACGTcount: A:0.49, C:0.07, G:0.23, T:0.21


Consensus pattern (20 bp):   
ATGAAGGAAATGTTGAACAA
Done.