Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01003283.1 Corchorus capsularis cultivar CVL-1 contig03291, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3725
ACGTcount: A:0.33, C:0.19, G:0.17, T:0.31


Found at i:3446 original size:32 final size:32

Alignment explanation


    Indices: 3400--3465  Score: 105
    Period size: 32  Copynumber: 2.1  Consensus size: 32

       3390 ATATTGATCA

                     *     *                
       3400 ATAACATTATTTTCCTATCTACTTACTGGGAC
          1 ATAACATTAATTTCCCATCTACTTACTGGGAC

                                     *      
       3432 ATAACATTAATTTCCCATCTACTTATTGGGAC
          1 ATAACATTAATTTCCCATCTACTTACTGGGAC

              
       3464 AT
          1 AT

       3466 TTCTGAAGAG


Statistics
Matches: 31,  Mismatches: 3, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
  32   31  1.00

ACGTcount: A:0.30, C:0.21, G:0.09, T:0.39


Consensus pattern (32 bp):   
ATAACATTAATTTCCCATCTACTTACTGGGAC
Done.