Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01003310.1 Corchorus capsularis cultivar CVL-1 contig03318, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 720

Length: 1200
ACGTcount: A:0.28, C:0.13, G:0.15, T:0.44


Found at i:733 original size:18 final size:18

Alignment explanation


    Indices: 710--745  Score: 63
    Period size: 18  Copynumber: 2.0  Consensus size: 18

        700 TAAAAATGTT

                   *          
        710 TTTTGAAGATTTTTTGGA
          1 TTTTGAAAATTTTTTGGA

                              
        728 TTTTGAAAATTTTTTGGA
          1 TTTTGAAAATTTTTTGGA

        746 ATTTCATAAG


Statistics
Matches: 17,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  18   17  1.00

ACGTcount: A:0.25, C:0.00, G:0.19, T:0.56


Consensus pattern (18 bp):   
TTTTGAAAATTTTTTGGA
Done.