Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01003317.1 Corchorus capsularis cultivar CVL-1 contig03325, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 993

Length: 1655
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.31


Found at i:1018 original size:20 final size:20

Alignment explanation


    Indices: 995--1033  Score: 60
    Period size: 20  Copynumber: 1.9  Consensus size: 20

        985 TATTCCTCTG

                  *             
        995 CTTCCCTTCTCTTTCTTCTA
          1 CTTCCCATCTCTTTCTTCTA

                *              
       1015 CTTCTCATCTCTTTCTTCT
          1 CTTCCCATCTCTTTCTTCT

       1034 CTTAGAAACT


Statistics
Matches: 17,  Mismatches: 2, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  20   17  1.00

ACGTcount: A:0.05, C:0.38, G:0.00, T:0.56


Consensus pattern (20 bp):   
CTTCCCATCTCTTTCTTCTA

Found at i:1373 original size:2 final size:2

Alignment explanation


    Indices: 1366--1391  Score: 52
    Period size: 2  Copynumber: 13.0  Consensus size: 2

       1356 TTATAATTAG

                                                  
       1366 TA TA TA TA TA TA TA TA TA TA TA TA TA
          1 TA TA TA TA TA TA TA TA TA TA TA TA TA

       1392 ATCCCGCGCG


Statistics
Matches: 24,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   24  1.00

ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50


Consensus pattern (2 bp):   
TA

Done.