Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01003322.1 Corchorus capsularis cultivar CVL-1 contig03330, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2481
ACGTcount: A:0.32, C:0.17, G:0.13, T:0.38


Found at i:810 original size:2 final size:2

Alignment explanation


    Indices: 805--833  Score: 51
    Period size: 2  Copynumber: 15.0  Consensus size: 2

        795 TTCTTCTTTG

                                                        
        805 AT AT AT AT AT AT AT AT AT AT AT AT -T AT AT
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT

        834 GGTAGAAGTT


Statistics
Matches: 26,  Mismatches: 0, Indels: 2
        0.93            0.00        0.07

Matches are distributed among these distances:
   1    1  0.04
   2   25  0.96

ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52


Consensus pattern (2 bp):   
AT

Done.