Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01003325.1 Corchorus capsularis cultivar CVL-1 contig03333, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 721

Length: 1203
ACGTcount: A:0.33, C:0.16, G:0.18, T:0.33


Found at i:71 original size:28 final size:28

Alignment explanation


    Indices: 1--70  Score: 97
    Period size: 27  Copynumber: 2.5  Consensus size: 28

                             *   *      
          1 CATTTTGGTCATTTTCTGCATTTAGGGG
          1 CATTTTGGTCATTTTCTACATCTAGGGG

                  *                     
         29 CATTTTCGTCATTTTC-ACATCTAGGGG
          1 CATTTTGGTCATTTTCTACATCTAGGGG

                 *         
         56 CATTTAGGTCATTTT
          1 CATTTTGGTCATTTT

         71 TTTTTTTTGC


Statistics
Matches: 37,  Mismatches: 5, Indels: 1
        0.86            0.12        0.02

Matches are distributed among these distances:
  27   22  0.59
  28   15  0.41

ACGTcount: A:0.17, C:0.17, G:0.20, T:0.46


Consensus pattern (28 bp):   
CATTTTGGTCATTTTCTACATCTAGGGG

Found at i:276 original size:21 final size:21

Alignment explanation


    Indices: 234--277  Score: 54
    Period size: 21  Copynumber: 2.1  Consensus size: 21

        224 CATTATGGTG

                             *   
        234 TTTTCAATTAGTATTGTTGCA
          1 TTTTCAATTAGTATTGTGGCA

                  *               
        255 TTTTCATTTAGTAATT-TGGCA
          1 TTTTCAATTAGT-ATTGTGGCA

              
        276 TT
          1 TT

        278 GTTACACTCA


Statistics
Matches: 20,  Mismatches: 2, Indels: 2
        0.83            0.08        0.08

Matches are distributed among these distances:
  21   17  0.85
  22    3  0.15

ACGTcount: A:0.23, C:0.09, G:0.14, T:0.55


Consensus pattern (21 bp):   
TTTTCAATTAGTATTGTGGCA
Done.