Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01003326.1 Corchorus capsularis cultivar CVL-1 contig03334, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 749

Length: 1249
ACGTcount: A:0.34, C:0.18, G:0.15, T:0.33


Found at i:515 original size:19 final size:18

Alignment explanation


    Indices: 482--517  Score: 54
    Period size: 19  Copynumber: 1.9  Consensus size: 18

        472 TTGAAATAAT

                              
        482 TCTTCAATAATCTTCAAA
          1 TCTTCAATAATCTTCAAA

                     *        
        500 TCTTCAAATTATCTTCAA
          1 TCTTC-AATAATCTTCAA

        518 GAAATCTTCA


Statistics
Matches: 16,  Mismatches: 1, Indels: 1
        0.89            0.06        0.06

Matches are distributed among these distances:
  18    5  0.31
  19   11  0.69

ACGTcount: A:0.36, C:0.22, G:0.00, T:0.42


Consensus pattern (18 bp):   
TCTTCAATAATCTTCAAA
Done.