Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01003347.1 Corchorus capsularis cultivar CVL-1 contig03355, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2561
ACGTcount: A:0.39, C:0.17, G:0.17, T:0.27


Found at i:1831 original size:2 final size:2

Alignment explanation


    Indices: 1788--1821  Score: 52
    Period size: 2  Copynumber: 17.0  Consensus size: 2

       1778 AGGGTGTGAG

                                                               
       1788 TA TA GTA TA -A TA TA TA TA TA TA TA TA TA TA TA TA
          1 TA TA -TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA

       1822 GCAGTATATA


Statistics
Matches: 30,  Mismatches: 0, Indels: 4
        0.88            0.00        0.12

Matches are distributed among these distances:
   1    1  0.03
   2   27  0.90
   3    2  0.07

ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47


Consensus pattern (2 bp):   
TA
Done.