Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01003363.1 Corchorus capsularis cultivar CVL-1 contig03371, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 896

Length: 1494
ACGTcount: A:0.30, C:0.21, G:0.16, T:0.32


Found at i:1392 original size:16 final size:16

Alignment explanation


    Indices: 1287--1339  Score: 56
    Period size: 16  Copynumber: 3.2  Consensus size: 16

       1277 TTTCTTATTC

                            
       1287 TTTTACTTAATACCAT
          1 TTTTACTTAATACCAT

                             
       1303 TTTT-CTTTAATACCAT
          1 TTTTAC-TTAATACCAT

              *               
       1319 CTCTTAC-TAGATACCAT
          1 -TTTTACTTA-ATACCAT

                
       1336 TTTT
          1 TTTT

       1340 TTACCCTTAA


Statistics
Matches: 31,  Mismatches: 2, Indels: 8
        0.76            0.05        0.20

Matches are distributed among these distances:
  15    1  0.03
  16   19  0.61
  17   10  0.32
  18    1  0.03

ACGTcount: A:0.26, C:0.21, G:0.02, T:0.51


Consensus pattern (16 bp):   
TTTTACTTAATACCAT
Done.