Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01003371.1 Corchorus capsularis cultivar CVL-1 contig03379, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 927

Length: 1546
ACGTcount: A:0.32, C:0.24, G:0.17, T:0.28


Found at i:44 original size:33 final size:33

Alignment explanation


    Indices: 2--98  Score: 167
    Period size: 33  Copynumber: 2.9  Consensus size: 33

          1 G

                            *    *           
          2 TGGCCGGGCATCTCCATGTCGTGTGGCCGGTGA
          1 TGGCCGGGCATCTCCAAGTCGCGTGGCCGGTGA

                                             
         35 TGGCCGGGCATCTCCAAGTCGCGTGGCCGGTGA
          1 TGGCCGGGCATCTCCAAGTCGCGTGGCCGGTGA

               *                           
         68 TGGTCGGGCATCTCCAAGTCGCGTGGCCGGT
          1 TGGCCGGGCATCTCCAAGTCGCGTGGCCGGT

         99 CACAAGTGCT


Statistics
Matches: 61,  Mismatches: 3, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  33   61  1.00

ACGTcount: A:0.10, C:0.29, G:0.39, T:0.22


Consensus pattern (33 bp):   
TGGCCGGGCATCTCCAAGTCGCGTGGCCGGTGA
Done.