Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01003375.1 Corchorus capsularis cultivar CVL-1 contig03383, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1918
ACGTcount: A:0.37, C:0.13, G:0.13, T:0.36


Found at i:903 original size:32 final size:32

Alignment explanation


    Indices: 866--926  Score: 104
    Period size: 32  Copynumber: 1.9  Consensus size: 32

        856 TTTTGTTACT

                            *               
        866 AGAGTATACGTAACATGCATAATTATTGCTAC
          1 AGAGTATACGTAACATACATAATTATTGCTAC

                   *                     
        898 AGAGTATGCGTAACATACATAATTATTGC
          1 AGAGTATACGTAACATACATAATTATTGC

        927 AAATATATAA


Statistics
Matches: 27,  Mismatches: 2, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  32   27  1.00

ACGTcount: A:0.38, C:0.15, G:0.16, T:0.31


Consensus pattern (32 bp):   
AGAGTATACGTAACATACATAATTATTGCTAC

Found at i:1173 original size:7 final size:8

Alignment explanation


    Indices: 1156--1189  Score: 59
    Period size: 8  Copynumber: 4.2  Consensus size: 8

       1146 ACCACCATAC

                    
       1156 TTTGTTTT
          1 TTTGTTTT

                    
       1164 TTTGTTTT
          1 TTTGTTTT

                    
       1172 TTTGTTTT
          1 TTTGTTTT

               *    
       1180 TTTATTTT
          1 TTTGTTTT

              
       1188 TT
          1 TT

       1190 AAGCTAAAAC


Statistics
Matches: 25,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
   8   25  1.00

ACGTcount: A:0.03, C:0.00, G:0.09, T:0.88


Consensus pattern (8 bp):   
TTTGTTTT

Done.