Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01003376.1 Corchorus capsularis cultivar CVL-1 contig03384, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1986
ACGTcount: A:0.33, C:0.18, G:0.13, T:0.36


Found at i:150 original size:13 final size:13

Alignment explanation


    Indices: 122--159  Score: 53
    Period size: 13  Copynumber: 3.1  Consensus size: 13

        112 CCCTTCTCCC

                         
        122 CTTTTTTTTT-TT
          1 CTTTTTTTTTCTT

                         
        134 -TTTTTTTTTCTT
          1 CTTTTTTTTTCTT

                 *       
        146 CTTTTCTTTTCTT
          1 CTTTTTTTTTCTT

             
        159 C
          1 C

        160 CGGCAGCCCT


Statistics
Matches: 23,  Mismatches: 1, Indels: 3
        0.85            0.04        0.11

Matches are distributed among these distances:
  11    9  0.39
  12    2  0.09
  13   12  0.52

ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84


Consensus pattern (13 bp):   
CTTTTTTTTTCTT

Found at i:1024 original size:34 final size:34

Alignment explanation


    Indices: 986--1050  Score: 103
    Period size: 34  Copynumber: 1.9  Consensus size: 34

        976 TAAGCAACTA

                                              
        986 ATTTGGCCACTTGTCAAACAATGAATTAGGCCAT
          1 ATTTGGCCACTTGTCAAACAATGAATTAGGCCAT

                             **   *        
       1020 ATTTGGCCACTTGTCAAGTAATTAATTAGGC
          1 ATTTGGCCACTTGTCAAACAATGAATTAGGC

       1051 AACATGTTTT


Statistics
Matches: 28,  Mismatches: 3, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  34   28  1.00

ACGTcount: A:0.31, C:0.18, G:0.18, T:0.32


Consensus pattern (34 bp):   
ATTTGGCCACTTGTCAAACAATGAATTAGGCCAT
Done.