Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01003397.1 Corchorus capsularis cultivar CVL-1 contig03405, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 601

Length: 1003
ACGTcount: A:0.33, C:0.15, G:0.19, T:0.33


Found at i:184 original size:9 final size:9

Alignment explanation


    Indices: 166--199  Score: 50
    Period size: 9  Copynumber: 3.7  Consensus size: 9

        156 AGTTATATCG

                 *   
        166 AAAAATATA
          1 AAAAAAATA

                     
        175 AAAAAAATA
          1 AAAAAAATA

                      
        184 AAATAAAATA
          1 AAA-AAAATA

                  
        194 AAAAAA
          1 AAAAAA

        200 TTTTCGACCA


Statistics
Matches: 23,  Mismatches: 1, Indels: 2
        0.88            0.04        0.08

Matches are distributed among these distances:
   9   14  0.61
  10    9  0.39

ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15


Consensus pattern (9 bp):   
AAAAAAATA
Done.