Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01003406.1 Corchorus capsularis cultivar CVL-1 contig03414, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 630

Length: 1051
ACGTcount: A:0.30, C:0.10, G:0.19, T:0.41


Found at i:568 original size:42 final size:42

Alignment explanation


    Indices: 521--612  Score: 157
    Period size: 42  Copynumber: 2.2  Consensus size: 42

        511 GTGTTGTTAC

                                                      
        521 TTAATTATCGTTGATTAGTATTTGTTTCAATTTATAATTTGA
          1 TTAATTATCGTTGATTAGTATTTGTTTCAATTTATAATTTGA

                               *             *        
        563 TTAATTATCGTTGATTAGTCTTTGTTTCAATTTGTAATTTGA
          1 TTAATTATCGTTGATTAGTATTTGTTTCAATTTATAATTTGA

               *    
        605 TTAGTTAT
          1 TTAATTAT

        613 ATTGATATTG


Statistics
Matches: 47,  Mismatches: 3, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  42   47  1.00

ACGTcount: A:0.26, C:0.05, G:0.13, T:0.55


Consensus pattern (42 bp):   
TTAATTATCGTTGATTAGTATTTGTTTCAATTTATAATTTGA
Done.