Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01003414.1 Corchorus capsularis cultivar CVL-1 contig03422, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 715

Length: 1193
ACGTcount: A:0.31, C:0.17, G:0.19, T:0.33


Found at i:86 original size:28 final size:27

Alignment explanation


    Indices: 46--104  Score: 93
    Period size: 28  Copynumber: 2.2  Consensus size: 27

         36 TACTAGGTAG

                                        
         46 ATAAATAGCCACAGAAATAAGCTACATC
          1 ATAAATAGCCACAGAAATAAGCTA-ATC

                         *             
         74 ATAAATAGCCACATAAATAAGCTAATC
          1 ATAAATAGCCACAGAAATAAGCTAATC

                 
        101 -TAAA
          1 ATAAA

        105 ATCTCTGAAA


Statistics
Matches: 30,  Mismatches: 1, Indels: 2
        0.91            0.03        0.06

Matches are distributed among these distances:
  26    4  0.13
  27    3  0.10
  28   23  0.77

ACGTcount: A:0.53, C:0.19, G:0.08, T:0.20


Consensus pattern (27 bp):   
ATAAATAGCCACAGAAATAAGCTAATC
Done.