Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01003423.1 Corchorus capsularis cultivar CVL-1 contig03431, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 687

Length: 1146
ACGTcount: A:0.31, C:0.22, G:0.21, T:0.26


Found at i:551 original size:33 final size:33

Alignment explanation


    Indices: 475--587  Score: 131
    Period size: 33  Copynumber: 3.4  Consensus size: 33

        465 TAGACAAAGG

                                   *    *     
        475 GTCGCGTGGCCGGTTGTGGCCGGGCATGGCCGA-
          1 GTCGCGTGGCCGGTTGTGGCCGGACATGTCC-AT

                **           *     *         
        508 GTCGTTTGGCCGGTTGTAGCCGGCCATGTCCAT
          1 GTCGCGTGGCCGGTTGTGGCCGGACATGTCCAT

                                              
        541 GTCGCGTGGCCGG-TGATGGCCGGACATGTCCAT
          1 GTCGCGTGGCCGGTTG-TGGCCGGACATGTCCAT

                    *     
        574 GTCGCGTGACCGGT
          1 GTCGCGTGGCCGGT

        588 CTTGTCTCCG


Statistics
Matches: 67,  Mismatches: 10, Indels: 5
        0.82            0.12        0.06

Matches are distributed among these distances:
  32    3  0.04
  33   64  0.96

ACGTcount: A:0.09, C:0.27, G:0.41, T:0.23


Consensus pattern (33 bp):   
GTCGCGTGGCCGGTTGTGGCCGGACATGTCCAT
Done.