Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01003426.1 Corchorus capsularis cultivar CVL-1 contig03434, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 668

Length: 1114
ACGTcount: A:0.36, C:0.16, G:0.19, T:0.29


Found at i:351 original size:14 final size:13

Alignment explanation


    Indices: 323--350  Score: 56
    Period size: 13  Copynumber: 2.2  Consensus size: 13

        313 ATTTAGGATC

                         
        323 AAGATTTGAAAAA
          1 AAGATTTGAAAAA

                         
        336 AAGATTTGAAAAA
          1 AAGATTTGAAAAA

              
        349 AA
          1 AA

        351 AAAGAAGGAA


Statistics
Matches: 15,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   15  1.00

ACGTcount: A:0.64, C:0.00, G:0.14, T:0.21


Consensus pattern (13 bp):   
AAGATTTGAAAAA

Found at i:375 original size:27 final size:27

Alignment explanation


    Indices: 342--396  Score: 74
    Period size: 27  Copynumber: 2.0  Consensus size: 27

        332 AAAAAAGATT

                  *               *     
        342 TGAAAAAAAAAAGAAGGAAAATGAAAAA
          1 TGAAAACAAAAA-AAGGAAAATCAAAAA

                   *                   
        370 TGAAAACGAAAAAAGGAAAATCAAAAA
          1 TGAAAACAAAAAAAGGAAAATCAAAAA

        397 ATTAAAAGAT


Statistics
Matches: 24,  Mismatches: 3, Indels: 1
        0.86            0.11        0.04

Matches are distributed among these distances:
  27   14  0.58
  28   10  0.42

ACGTcount: A:0.73, C:0.04, G:0.16, T:0.07


Consensus pattern (27 bp):   
TGAAAACAAAAAAAGGAAAATCAAAAA
Done.