Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01003435.1 Corchorus capsularis cultivar CVL-1 contig03443, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 679

Length: 1132
ACGTcount: A:0.30, C:0.19, G:0.17, T:0.34


Found at i:647 original size:10 final size:10

Alignment explanation


    Indices: 632--660  Score: 58
    Period size: 10  Copynumber: 2.9  Consensus size: 10

        622 GTCCCTGCTC

                      
        632 AATTCCAGAA
          1 AATTCCAGAA

                      
        642 AATTCCAGAA
          1 AATTCCAGAA

                     
        652 AATTCCAGA
          1 AATTCCAGA

        661 GTCCTCATCC


Statistics
Matches: 19,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  10   19  1.00

ACGTcount: A:0.48, C:0.21, G:0.10, T:0.21


Consensus pattern (10 bp):   
AATTCCAGAA
Done.