Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01000344.1 Corchorus capsularis cultivar CVL-1 contig00344, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4250
ACGTcount: A:0.29, C:0.16, G:0.18, T:0.37


Found at i:104 original size:4 final size:4

Alignment explanation


    Indices: 97--123  Score: 54
    Period size: 4  Copynumber: 6.8  Consensus size: 4

         87 TATATATATA

                                             
         97 TATG TATG TATG TATG TATG TATG TAT
          1 TATG TATG TATG TATG TATG TATG TAT

        124 ATTATTTCTG


Statistics
Matches: 23,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   4   23  1.00

ACGTcount: A:0.26, C:0.00, G:0.22, T:0.52


Consensus pattern (4 bp):   
TATG

Done.