Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01003445.1 Corchorus capsularis cultivar CVL-1 contig03453, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 919

Length: 1533
ACGTcount: A:0.37, C:0.18, G:0.16, T:0.29


Found at i:820 original size:13 final size:13

Alignment explanation


    Indices: 802--836  Score: 61
    Period size: 13  Copynumber: 2.7  Consensus size: 13

        792 AATCTATATC

                         
        802 TAAAGCAAATTAA
          1 TAAAGCAAATTAA

                    *    
        815 TAAAGCAATTTAA
          1 TAAAGCAAATTAA

                     
        828 TAAAGCAAA
          1 TAAAGCAAA

        837 CAATAATTAT


Statistics
Matches: 20,  Mismatches: 2, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
  13   20  1.00

ACGTcount: A:0.60, C:0.09, G:0.09, T:0.23


Consensus pattern (13 bp):   
TAAAGCAAATTAA
Done.