Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01003454.1 Corchorus capsularis cultivar CVL-1 contig03462, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 607

Length: 1013
ACGTcount: A:0.40, C:0.18, G:0.15, T:0.28


Found at i:549 original size:21 final size:21

Alignment explanation


    Indices: 525--568  Score: 88
    Period size: 21  Copynumber: 2.1  Consensus size: 21

        515 AAAAAAAAAG

                                 
        525 AGGAAAAATAATGGTCTGCAA
          1 AGGAAAAATAATGGTCTGCAA

                                 
        546 AGGAAAAATAATGGTCTGCAA
          1 AGGAAAAATAATGGTCTGCAA

              
        567 AG
          1 AG

        569 TTATCCCAAT


Statistics
Matches: 23,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  21   23  1.00

ACGTcount: A:0.48, C:0.09, G:0.25, T:0.18


Consensus pattern (21 bp):   
AGGAAAAATAATGGTCTGCAA

Found at i:830 original size:37 final size:37

Alignment explanation


    Indices: 780--854  Score: 132
    Period size: 37  Copynumber: 2.0  Consensus size: 37

        770 AAAAATTGTC

                                          *      
        780 TCCAATTATGTCAATAGTACAAAGTAGAATTATTGAT
          1 TCCAATTATGTCAATAGTACAAAGTAGAATCATTGAT

                           *                     
        817 TCCAATTATGTCAATCGTACAAAGTAGAATCATTGAT
          1 TCCAATTATGTCAATAGTACAAAGTAGAATCATTGAT

             
        854 T
          1 T

        855 GTATTGAAAT


Statistics
Matches: 36,  Mismatches: 2, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  37   36  1.00

ACGTcount: A:0.39, C:0.13, G:0.13, T:0.35


Consensus pattern (37 bp):   
TCCAATTATGTCAATAGTACAAAGTAGAATCATTGAT
Done.