Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01003470.1 Corchorus capsularis cultivar CVL-1 contig03478, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 825

Length: 1375
ACGTcount: A:0.30, C:0.16, G:0.17, T:0.37


Found at i:288 original size:6 final size:6

Alignment explanation


    Indices: 277--302  Score: 52
    Period size: 6  Copynumber: 4.3  Consensus size: 6

        267 ATTAATCTGC

                                          
        277 TTTAGA TTTAGA TTTAGA TTTAGA TT
          1 TTTAGA TTTAGA TTTAGA TTTAGA TT

        303 GCTTTACTTT


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   20  1.00

ACGTcount: A:0.31, C:0.00, G:0.15, T:0.54


Consensus pattern (6 bp):   
TTTAGA

Done.