Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01003480.1 Corchorus capsularis cultivar CVL-1 contig03488, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 946

Length: 1577
ACGTcount: A:0.29, C:0.13, G:0.18, T:0.41


Found at i:267 original size:6 final size:6

Alignment explanation


    Indices: 256--287  Score: 57
    Period size: 6  Copynumber: 5.5  Consensus size: 6

        246 ATTAATCTGC

                                                  
        256 TTTAGA TTTAGA TTTAGA TTTAGA TTTA-A TTT
          1 TTTAGA TTTAGA TTTAGA TTTAGA TTTAGA TTT

        288 GTTTTGCTTT


Statistics
Matches: 26,  Mismatches: 0, Indels: 1
        0.96            0.00        0.04

Matches are distributed among these distances:
   5    4  0.15
   6   22  0.85

ACGTcount: A:0.31, C:0.00, G:0.12, T:0.56


Consensus pattern (6 bp):   
TTTAGA

Found at i:663 original size:36 final size:36

Alignment explanation


    Indices: 623--697  Score: 150
    Period size: 36  Copynumber: 2.1  Consensus size: 36

        613 TCTGTTTTGG

                                                
        623 GCTCAACTTTTTAGTTTAATAGTTAGTATCCTTTTA
          1 GCTCAACTTTTTAGTTTAATAGTTAGTATCCTTTTA

                                                
        659 GCTCAACTTTTTAGTTTAATAGTTAGTATCCTTTTA
          1 GCTCAACTTTTTAGTTTAATAGTTAGTATCCTTTTA

               
        695 GCT
          1 GCT

        698 TTCAATAAAA


Statistics
Matches: 39,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  36   39  1.00

ACGTcount: A:0.24, C:0.15, G:0.12, T:0.49


Consensus pattern (36 bp):   
GCTCAACTTTTTAGTTTAATAGTTAGTATCCTTTTA
Done.