Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01000349.1 Corchorus capsularis cultivar CVL-1 contig00349, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 15389
ACGTcount: A:0.32, C:0.18, G:0.19, T:0.31


Found at i:2125 original size:15 final size:15

Alignment explanation


    Indices: 2085--2126  Score: 66
    Period size: 15  Copynumber: 2.8  Consensus size: 15

       2075 AATTGAAGCA

                           
       2085 AAACAAAAATCAGAT
          1 AAACAAAAATCAGAT

               *           
       2100 AAAGAAAAATCAGAT
          1 AAACAAAAATCAGAT

                  *     
       2115 AAACAATAATCA
          1 AAACAAAAATCA

       2127 TTGCTCATTA


Statistics
Matches: 24,  Mismatches: 3, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  15   24  1.00

ACGTcount: A:0.67, C:0.12, G:0.07, T:0.14


Consensus pattern (15 bp):   
AAACAAAAATCAGAT
Done.