Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01003492.1 Corchorus capsularis cultivar CVL-1 contig03500, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 714

Length: 1191
ACGTcount: A:0.33, C:0.15, G:0.14, T:0.38


Found at i:665 original size:46 final size:46

Alignment explanation


    Indices: 613--750  Score: 258
    Period size: 46  Copynumber: 3.0  Consensus size: 46

        603 TAAGTTTTAA

                                                          
        613 TGGTTAATAAGTAATTTAATATAAATGGAAATATCTAAAATATCTT
          1 TGGTTAATAAGTAATTTAATATAAATGGAAATATCTAAAATATCTT

                       *                                  
        659 TGGTTAATAAGAAATTTAATATAAATGGAAATATCTAAAATATCTT
          1 TGGTTAATAAGTAATTTAATATAAATGGAAATATCTAAAATATCTT

                                              *           
        705 TGGTTAATAAGTAATTTAATATAAATGGAAATATATAAAATATCTT
          1 TGGTTAATAAGTAATTTAATATAAATGGAAATATCTAAAATATCTT

        751 CTTAAACTTT


Statistics
Matches: 89,  Mismatches: 3, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  46   89  1.00

ACGTcount: A:0.47, C:0.04, G:0.11, T:0.38


Consensus pattern (46 bp):   
TGGTTAATAAGTAATTTAATATAAATGGAAATATCTAAAATATCTT
Done.