Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01003494.1 Corchorus capsularis cultivar CVL-1 contig03502, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 652

Length: 1087
ACGTcount: A:0.36, C:0.10, G:0.12, T:0.41


Found at i:769 original size:21 final size:19

Alignment explanation


    Indices: 745--783  Score: 51
    Period size: 21  Copynumber: 1.9  Consensus size: 19

        735 ATTATAGCTA

                                 
        745 TTTTAATAACTTTTATAATTT
          1 TTTTAATAA-TTTTA-AATTT

                 *            
        766 TTTTAGTAATTTTAAATT
          1 TTTTAATAATTTTAAATT

        784 ACAAGATTAG


Statistics
Matches: 17,  Mismatches: 1, Indels: 2
        0.85            0.05        0.10

Matches are distributed among these distances:
  19    4  0.24
  20    5  0.29
  21    8  0.47

ACGTcount: A:0.33, C:0.03, G:0.03, T:0.62


Consensus pattern (19 bp):   
TTTTAATAATTTTAAATTT

Found at i:885 original size:2 final size:2

Alignment explanation


    Indices: 878--908  Score: 62
    Period size: 2  Copynumber: 15.5  Consensus size: 2

        868 ACTATAGCTT

                                                          
        878 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
          1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T

        909 CTTCACAACT


Statistics
Matches: 29,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   29  1.00

ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52


Consensus pattern (2 bp):   
TA

Done.