Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01003496.1 Corchorus capsularis cultivar CVL-1 contig03504, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1803
ACGTcount: A:0.30, C:0.13, G:0.20, T:0.38


Found at i:1639 original size:18 final size:18

Alignment explanation


    Indices: 1608--1642  Score: 52
    Period size: 18  Copynumber: 1.9  Consensus size: 18

       1598 GGTGAAATGG

                 *            
       1608 GTCGGTTGAGTCGGTTTT
          1 GTCGGGTGAGTCGGTTTT

                     *       
       1626 GTCGGGTGATTCGGTTT
          1 GTCGGGTGAGTCGGTTT

       1643 GTGAAGTCGG


Statistics
Matches: 15,  Mismatches: 2, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  18   15  1.00

ACGTcount: A:0.06, C:0.11, G:0.40, T:0.43


Consensus pattern (18 bp):   
GTCGGGTGAGTCGGTTTT
Done.