Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01003507.1 Corchorus capsularis cultivar CVL-1 contig03515, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2585
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.37


Found at i:489 original size:29 final size:30

Alignment explanation


    Indices: 429--499  Score: 92
    Period size: 29  Copynumber: 2.4  Consensus size: 30

        419 CTAAATATCT

                *                          
        429 AAAAAAATCCCTTATATTTTTCTTTTGGGAC
          1 AAAATAATCCCTTATA-TTTTCTTTTGGGAC

                                           
        460 AAAATAATCCCTTATA-TTT-TTTTGAGGAC
          1 AAAATAATCCCTTATATTTTCTTTTG-GGAC

               *       
        489 AAATTAATCCC
          1 AAAATAATCCC

        500 CTACGTTTCA


Statistics
Matches: 37,  Mismatches: 2, Indels: 4
        0.86            0.05        0.09

Matches are distributed among these distances:
  28    5  0.14
  29   17  0.46
  31   15  0.41

ACGTcount: A:0.35, C:0.17, G:0.08, T:0.39


Consensus pattern (30 bp):   
AAAATAATCCCTTATATTTTCTTTTGGGAC
Done.