Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01003511.1 Corchorus capsularis cultivar CVL-1 contig03519, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 639

Length: 1065
ACGTcount: A:0.31, C:0.22, G:0.20, T:0.27


Found at i:1040 original size:33 final size:33

Alignment explanation


    Indices: 935--1043  Score: 112
    Period size: 33  Copynumber: 3.3  Consensus size: 33

        925 GCGCCTAGCG

                                   *    *     
        935 ATGGCCGGT-TGTGGCCGGACATGTCCATGTCGC
          1 ATGGCCGGTGT-TGGCCGGACATCTCCAAGTCGC

            *                  *       *    * 
        968 GTGGCCGGTGTTGGCCGGGGCATCTCCGAGTCAC
          1 ATGGCCGGTGTTGGCC-GGACATCTCCAAGTCGC

            *                   *           *
       1002 GTGGCCGGTGTTGGCCGGACTTCTCCAAGTCGT
          1 ATGGCCGGTGTTGGCCGGACATCTCCAAGTCGC

                     
       1035 ATGGCCGGT
          1 ATGGCCGGT

       1044 CACTAGTGCT


Statistics
Matches: 62,  Mismatches: 12, Indels: 4
        0.79            0.15        0.05

Matches are distributed among these distances:
  33   33  0.53
  34   29  0.47

ACGTcount: A:0.10, C:0.28, G:0.39, T:0.24


Consensus pattern (33 bp):   
ATGGCCGGTGTTGGCCGGACATCTCCAAGTCGC
Done.