Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01003522.1 Corchorus capsularis cultivar CVL-1 contig03530, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 600

Length: 1000
ACGTcount: A:0.25, C:0.26, G:0.21, T:0.28


Found at i:312 original size:33 final size:32

Alignment explanation


    Indices: 275--381  Score: 126
    Period size: 33  Copynumber: 3.2  Consensus size: 32

        265 CGCCTAGCGA

                                  *           
        275 TGGCCGGT-TGTGGCCGGACATGTCCATGTCGCG
          1 TGGCCGGTGT-TGGCCGGACATCTCCA-GTCGCG

                             *            *  
        308 TGGCCGGTGTTGGCCGGGCATCTCCGAGTCACG
          1 TGGCCGGTGTTGGCCGGACATCTCC-AGTCGCG

                               *            *
        341 TGGCCGGTGTTGGCCGGACTTCTCCAAGTCGCA
          1 TGGCCGGTGTTGGCCGGACATCTCC-AGTCGCG

                    
        374 TGGCCGGT
          1 TGGCCGGT

        382 CACTAGTGCT


Statistics
Matches: 64,  Mismatches: 8, Indels: 4
        0.84            0.11        0.05

Matches are distributed among these distances:
  33   62  0.97
  34    2  0.03

ACGTcount: A:0.09, C:0.29, G:0.38, T:0.23


Consensus pattern (32 bp):   
TGGCCGGTGTTGGCCGGACATCTCCAGTCGCG
Done.