Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01003538.1 Corchorus capsularis cultivar CVL-1 contig03546, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 861

Length: 1435
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33


Found at i:121 original size:32 final size:32

Alignment explanation


    Indices: 76--136  Score: 104
    Period size: 32  Copynumber: 1.9  Consensus size: 32

         66 GAAACTGGTA

                    *                       
         76 ATCAACTTTATTCAGTGTAATTAAGTAAAGTG
          1 ATCAACTTAATTCAGTGTAATTAAGTAAAGTG

                              *          
        108 ATCAACTTAATTCAGTGTTATTAAGTAAA
          1 ATCAACTTAATTCAGTGTAATTAAGTAAA

        137 TTCAGTGATT


Statistics
Matches: 27,  Mismatches: 2, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  32   27  1.00

ACGTcount: A:0.39, C:0.10, G:0.13, T:0.38


Consensus pattern (32 bp):   
ATCAACTTAATTCAGTGTAATTAAGTAAAGTG

Found at i:973 original size:6 final size:6

Alignment explanation


    Indices: 964--993  Score: 60
    Period size: 6  Copynumber: 5.0  Consensus size: 6

        954 CCTAAAAACA

                                              
        964 AAAATT AAAATT AAAATT AAAATT AAAATT
          1 AAAATT AAAATT AAAATT AAAATT AAAATT

        994 GGGTTGCCTC


Statistics
Matches: 24,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   24  1.00

ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33


Consensus pattern (6 bp):   
AAAATT

Done.