Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01003566.1 Corchorus capsularis cultivar CVL-1 contig03574, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1861
ACGTcount: A:0.30, C:0.15, G:0.16, T:0.39


Found at i:1287 original size:40 final size:41

Alignment explanation


    Indices: 1185--1289  Score: 160
    Period size: 40  Copynumber: 2.6  Consensus size: 41

       1175 ATTTTATTAA

                                     *               
       1185 TTTCCAAAAGTCTTCTCTTGG-ATTTCTAAAAACTTTTTAT
          1 TTTCCAAAAGTCTTCTCTTGGAATTACTAAAAACTTTTTAT

                       *                    *        
       1225 TTTCCAAAAGTTTTCTCTTGGAATTACTAAAATC-TTTTAT
          1 TTTCCAAAAGTCTTCTCTTGGAATTACTAAAAACTTTTTAT

                            *        
       1265 TTTCCAAAAGTCTTCTATTGGAATT
          1 TTTCCAAAAGTCTTCTCTTGGAATT

       1290 GCTTAAATAG


Statistics
Matches: 59,  Mismatches: 5, Indels: 2
        0.89            0.08        0.03

Matches are distributed among these distances:
  40   49  0.83
  41   10  0.17

ACGTcount: A:0.29, C:0.16, G:0.09, T:0.47


Consensus pattern (41 bp):   
TTTCCAAAAGTCTTCTCTTGGAATTACTAAAAACTTTTTAT
Done.