Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01003577.1 Corchorus capsularis cultivar CVL-1 contig03585, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 626

Length: 1044
ACGTcount: A:0.35, C:0.19, G:0.17, T:0.30


Found at i:187 original size:9 final size:8

Alignment explanation


    Indices: 153--186  Score: 50
    Period size: 8  Copynumber: 4.1  Consensus size: 8

        143 GAATCGGCTA

                    
        153 TGAATTTT
          1 TGAATTTT

                    *
        161 TGAAGTTTC
          1 TGAA-TTTT

                    
        170 TGAATTTT
          1 TGAATTTT

                    
        178 TGAATTTT
          1 TGAATTTT

             
        186 T
          1 T

        187 TCAAGAAGGT


Statistics
Matches: 23,  Mismatches: 2, Indels: 2
        0.85            0.07        0.07

Matches are distributed among these distances:
   8   16  0.70
   9    7  0.30

ACGTcount: A:0.24, C:0.03, G:0.15, T:0.59


Consensus pattern (8 bp):   
TGAATTTT
Done.