Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01003581.1 Corchorus capsularis cultivar CVL-1 contig03589, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 806

Length: 1344
ACGTcount: A:0.30, C:0.16, G:0.20, T:0.34


Found at i:1316 original size:51 final size:50

Alignment explanation


    Indices: 1237--1342  Score: 142
    Period size: 51  Copynumber: 2.1  Consensus size: 50

       1227 AAACAAAGAA

                              *             *               *  
       1237 AAACAAACAAAGAAAACATGGATCTTCCGACCGGGAAGGGCCATCTTTGGG
          1 AAACAAACAAAGAAAACAGGGATCTTCCGACCAGGAAGGGCCAT-TTTAGG

                   *                                 *         
       1288 AAACAAATAAAGAAAACAGGGA-CATTCCGACCAGGAAGGGGCATTTTAGG
          1 AAACAAACAAAGAAAACAGGGATC-TTCCGACCAGGAAGGGCCATTTTAGG

                 
       1338 AAACA
          1 AAACA

       1343 GA


Statistics
Matches: 49,  Mismatches: 5, Indels: 3
        0.86            0.09        0.05

Matches are distributed among these distances:
  50   11  0.22
  51   38  0.78

ACGTcount: A:0.42, C:0.19, G:0.25, T:0.14


Consensus pattern (50 bp):   
AAACAAACAAAGAAAACAGGGATCTTCCGACCAGGAAGGGCCATTTTAGG
Done.