Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01003582.1 Corchorus capsularis cultivar CVL-1 contig03590, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1765
ACGTcount: A:0.32, C:0.19, G:0.18, T:0.31


Found at i:1313 original size:21 final size:22

Alignment explanation


    Indices: 1288--1329  Score: 68
    Period size: 21  Copynumber: 2.0  Consensus size: 22

       1278 TGTTTAAATT

                 *                
       1288 TTATTTTTTTAAAAA-AAATAA
          1 TTATTATTTTAAAAATAAATAA

                                 
       1309 TTATTATTTTAAAAATAAATA
          1 TTATTATTTTAAAAATAAATA

       1330 TGGGCGGGCT


Statistics
Matches: 19,  Mismatches: 1, Indels: 1
        0.90            0.05        0.05

Matches are distributed among these distances:
  21   14  0.74
  22    5  0.26

ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48


Consensus pattern (22 bp):   
TTATTATTTTAAAAATAAATAA
Done.