Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01003587.1 Corchorus capsularis cultivar CVL-1 contig03595, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 883

Length: 1473
ACGTcount: A:0.32, C:0.19, G:0.17, T:0.33


Found at i:400 original size:12 final size:13

Alignment explanation


    Indices: 374--406  Score: 59
    Period size: 12  Copynumber: 2.6  Consensus size: 13

        364 AGGTATCCAT

                         
        374 GGATATATCGAAC
          1 GGATATATCGAAC

                         
        387 GGATATATCG-AC
          1 GGATATATCGAAC

                    
        399 GGATATAT
          1 GGATATAT

        407 TGAGGTATCG


Statistics
Matches: 20,  Mismatches: 0, Indels: 1
        0.95            0.00        0.05

Matches are distributed among these distances:
  12   10  0.50
  13   10  0.50

ACGTcount: A:0.36, C:0.12, G:0.24, T:0.27


Consensus pattern (13 bp):   
GGATATATCGAAC

Found at i:587 original size:12 final size:12

Alignment explanation


    Indices: 569--598  Score: 53
    Period size: 11  Copynumber: 2.6  Consensus size: 12

        559 ATATGTAGAC

                        
        569 ATTTTTTTTT-T
          1 ATTTTTTTTTAT

                        
        580 ATTTTTTTTTAT
          1 ATTTTTTTTTAT

                   
        592 ATTTTTT
          1 ATTTTTT

        599 ACTGTGAAAA


Statistics
Matches: 18,  Mismatches: 0, Indels: 1
        0.95            0.00        0.05

Matches are distributed among these distances:
  11   10  0.56
  12    8  0.44

ACGTcount: A:0.13, C:0.00, G:0.00, T:0.87


Consensus pattern (12 bp):   
ATTTTTTTTTAT
Done.