Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01003600.1 Corchorus capsularis cultivar CVL-1 contig03608, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 691

Length: 1153
ACGTcount: A:0.31, C:0.21, G:0.21, T:0.27


Found at i:1081 original size:33 final size:33

Alignment explanation


    Indices: 1044--1150  Score: 108
    Period size: 33  Copynumber: 3.2  Consensus size: 33

       1034 CGCCTAGCGA

                                 *    *      
       1044 TGGCCGGTTATGGCCGGACATGTCCATGTCGCG
          1 TGGCCGGTTATGGCCGGACATCTCCAAGTCGCG

                    *   *    *               
       1077 TGGCCGGTGATGTCCGGGCATCTCCAAGTCGCG
          1 TGGCCGGTTATGGCCGGACATCTCCAAGTCGCG

            *  *                *            *
       1110 CGGTCGGTGT-TGGCCGGACTTCTCCAAGTCGCA
          1 TGGCCGGT-TATGGCCGGACATCTCCAAGTCGCG

               *    
       1143 TGGTCGGT
          1 TGGCCGGT

       1151 CAC


Statistics
Matches: 60,  Mismatches: 13, Indels: 2
        0.80            0.17        0.03

Matches are distributed among these distances:
  33   60  1.00

ACGTcount: A:0.11, C:0.28, G:0.36, T:0.24


Consensus pattern (33 bp):   
TGGCCGGTTATGGCCGGACATCTCCAAGTCGCG
Done.