Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01003606.1 Corchorus capsularis cultivar CVL-1 contig03614, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 636

Length: 1061
ACGTcount: A:0.39, C:0.11, G:0.11, T:0.39


Found at i:400 original size:26 final size:25

Alignment explanation


    Indices: 364--427  Score: 76
    Period size: 26  Copynumber: 2.5  Consensus size: 25

        354 TTGTTGAAAT

                                      *
        364 GTTATTAAAATTTCCAAAAATGCA-AG
          1 GTTATT-AAATTTCCAAAAATG-AGAA

                          *           
        390 GTTATTGAAATTTCTAAAAATGAGAA
          1 GTTATT-AAATTTCCAAAAATGAGAA

                        
        416 GTTATTAAATTT
          1 GTTATTAAATTT

        428 ATGTAAAATT


Statistics
Matches: 34,  Mismatches: 3, Indels: 3
        0.85            0.08        0.08

Matches are distributed among these distances:
  25    7  0.21
  26   27  0.79

ACGTcount: A:0.44, C:0.06, G:0.12, T:0.38


Consensus pattern (25 bp):   
GTTATTAAATTTCCAAAAATGAGAA
Done.