Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01003608.1 Corchorus capsularis cultivar CVL-1 contig03616, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 670

Length: 1117
ACGTcount: A:0.34, C:0.14, G:0.23, T:0.30

Warning! 1 characters in sequence are not A, C, G, or T


Found at i:1117 original size:35 final size:35

Alignment explanation


    Indices: 1032--1117  Score: 129
    Period size: 36  Copynumber: 2.4  Consensus size: 35

       1022 TTGTTAGNTG

                                                
       1032 AAAATAATTCTGTTTTTGGTTGATCATAGCATTGAC
          1 AAAATAATTCTG-TTTTGGTTGATCATAGCATTGAC

                   *                            
       1068 AAAATAAATCTGTTTTGGTTGAATCATAGCATTGA-
          1 AAAATAATTCTGTTTTGGTTG-ATCATAGCATTGAC

                     *     
       1103 AAAATAATTTTGTTT
          1 AAAATAATTCTGTTT


Statistics
Matches: 46,  Mismatches: 3, Indels: 3
        0.88            0.06        0.06

Matches are distributed among these distances:
  35   22  0.48
  36   24  0.52

ACGTcount: A:0.35, C:0.08, G:0.15, T:0.42


Consensus pattern (35 bp):   
AAAATAATTCTGTTTTGGTTGATCATAGCATTGAC
Done.