Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01003617.1 Corchorus capsularis cultivar CVL-1 contig03625, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 978

Length: 1630
ACGTcount: A:0.31, C:0.20, G:0.22, T:0.27


Found at i:696 original size:6 final size:6

Alignment explanation


    Indices: 685--711  Score: 54
    Period size: 6  Copynumber: 4.5  Consensus size: 6

        675 TATTTATTTA

                                           
        685 TTTATT TTTATT TTTATT TTTATT TTT
          1 TTTATT TTTATT TTTATT TTTATT TTT

        712 TGGGAAAGAG


Statistics
Matches: 21,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   21  1.00

ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85


Consensus pattern (6 bp):   
TTTATT

Done.