Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01003618.1 Corchorus capsularis cultivar CVL-1 contig03626, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 727

Length: 1213
ACGTcount: A:0.39, C:0.18, G:0.14, T:0.29


Found at i:146 original size:44 final size:43

Alignment explanation


    Indices: 45--146  Score: 97
    Period size: 45  Copynumber: 2.4  Consensus size: 43

         35 TTTTTTAAAA

                                                       
         45 GGAAAAA-CGG-AAAAGGAAAATTAATTTTTTTAAAGAAAATC
          1 GGAAAAATCGGAAAAAGGAAAATTAATTTTTTTAAAGAAAATC

                         *                        **        
         86 GGAAACCAAAT--TAAAAACGGAAAA-TAATTTTTTTTTTAGAAAATC
          1 GG-AA--AAATCGGAAAAA-GGAAAATTAA-TTTTTTTAAAGAAAATC

                            
        131 GGAAAAATCGGAAAAA
          1 GGAAAAATCGGAAAAA

        147 AATTTTTTTT


Statistics
Matches: 48,  Mismatches: 4, Indels: 15
        0.72            0.06        0.22

Matches are distributed among these distances:
  41    2  0.04
  42    6  0.12
  44   17  0.35
  45   23  0.48

ACGTcount: A:0.53, C:0.07, G:0.16, T:0.25


Consensus pattern (43 bp):   
GGAAAAATCGGAAAAAGGAAAATTAATTTTTTTAAAGAAAATC
Done.