Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01003623.1 Corchorus capsularis cultivar CVL-1 contig03631, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 810

Length: 1350
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32


Found at i:790 original size:27 final size:27

Alignment explanation


    Indices: 752--805  Score: 108
    Period size: 27  Copynumber: 2.0  Consensus size: 27

        742 CTGGTTTATA

                                       
        752 AGAAAATTCAGTTAAGAAATGAAATTT
          1 AGAAAATTCAGTTAAGAAATGAAATTT

                                       
        779 AGAAAATTCAGTTAAGAAATGAAATTT
          1 AGAAAATTCAGTTAAGAAATGAAATTT

        806 TGTTGTGAAA


Statistics
Matches: 27,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  27   27  1.00

ACGTcount: A:0.52, C:0.04, G:0.15, T:0.30


Consensus pattern (27 bp):   
AGAAAATTCAGTTAAGAAATGAAATTT

Found at i:798 original size:13 final size:14

Alignment explanation


    Indices: 750--797  Score: 53
    Period size: 14  Copynumber: 3.5  Consensus size: 14

        740 TTCTGGTTTA

                          
        750 TAAGAAAATTCAGT
          1 TAAGAAAATTCAGT

                     ** * 
        764 TAAG-AAATGAAAT
          1 TAAGAAAATTCAGT

             *            
        777 TTAGAAAATTCAGT
          1 TAAGAAAATTCAGT

                   
        791 TAAGAAA
          1 TAAGAAA

        798 TGAAATTTTG


Statistics
Matches: 25,  Mismatches: 8, Indels: 2
        0.71            0.23        0.06

Matches are distributed among these distances:
  13    9  0.36
  14   16  0.64

ACGTcount: A:0.54, C:0.04, G:0.15, T:0.27


Consensus pattern (14 bp):   
TAAGAAAATTCAGT
Done.