Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01000363.1 Corchorus capsularis cultivar CVL-1 contig00363, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 796

Length: 1327
ACGTcount: A:0.36, C:0.18, G:0.17, T:0.29


Found at i:625 original size:10 final size:10

Alignment explanation


    Indices: 610--635  Score: 52
    Period size: 10  Copynumber: 2.6  Consensus size: 10

        600 GAAACAAGGG

                      
        610 TAGGGCGGTT
          1 TAGGGCGGTT

                      
        620 TAGGGCGGTT
          1 TAGGGCGGTT

                  
        630 TAGGGC
          1 TAGGGC

        636 TCCAAGTAGG


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  10   16  1.00

ACGTcount: A:0.12, C:0.12, G:0.50, T:0.27


Consensus pattern (10 bp):   
TAGGGCGGTT
Done.