Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01003634.1 Corchorus capsularis cultivar CVL-1 contig03642, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 721

Length: 1202
ACGTcount: A:0.32, C:0.15, G:0.20, T:0.34


Found at i:492 original size:10 final size:9

Alignment explanation


    Indices: 479--513  Score: 52
    Period size: 10  Copynumber: 3.7  Consensus size: 9

        469 AGTTATATCG

                      
        479 AAAAATATAA
          1 AAAAATA-AA

                     
        489 AAAAATAAA
          1 AAAAATAAA

                      
        498 ATAAAATAAA
          1 A-AAAATAAA

                  
        508 AAAAAT
          1 AAAAAT

        514 TTTCGACCAG


Statistics
Matches: 24,  Mismatches: 0, Indels: 3
        0.89            0.00        0.11

Matches are distributed among these distances:
   9    8  0.33
  10   16  0.67

ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17


Consensus pattern (9 bp):   
AAAAATAAA
Done.