Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01003637.1 Corchorus capsularis cultivar CVL-1 contig03645, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 954

Length: 1591
ACGTcount: A:0.34, C:0.13, G:0.14, T:0.39


Found at i:836 original size:13 final size:13

Alignment explanation


    Indices: 818--842  Score: 50
    Period size: 13  Copynumber: 1.9  Consensus size: 13

        808 GTTTGGACAC

                         
        818 GAAAATATATATT
          1 GAAAATATATATT

                        
        831 GAAAATATATAT
          1 GAAAATATATAT

        843 ATATATATAT


Statistics
Matches: 12,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   12  1.00

ACGTcount: A:0.56, C:0.00, G:0.08, T:0.36


Consensus pattern (13 bp):   
GAAAATATATATT

Found at i:840 original size:2 final size:2

Alignment explanation


    Indices: 835--864  Score: 51
    Period size: 2  Copynumber: 15.0  Consensus size: 2

        825 TATATTGAAA

                                                *       
        835 AT AT AT AT AT AT AT AT AT AT AT AT TT AT AT
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT

        865 CGAGACATGC


Statistics
Matches: 26,  Mismatches: 2, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
   2   26  1.00

ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53


Consensus pattern (2 bp):   
AT

Done.